[Eosc-life-wp4] [Extern] - Preparation asked: EOSC-Life WP4 taskforce multimodal data

Petr Holub petr.holub at bbmri-eric.eu
Wed Jan 22 06:58:50 GMT 2020

Dear Jan-Willem,

this is the digital pathology use case from BBMRI-ERIC - it is also the basis for the proposed EOSC-Life demonstrator. I hope this also helps.


Assoc. Prof. RNDr. Petr Holub, Ph.D.
Senior IT/Data Protection Manager

BBMRI-ERIC  | Neue Stiftingtalstrasse 2/B/6 |  8010 Graz | AUSTRIA
Phone: +43 316 34 99 17-18  | Fax: +43 316 34 99 17-99 | Mobile: +43 664 88 72 18 77
Skype:holubp | petr.holub at bbmri-eric.eu<mailto:petr.holub at bbmri-eric.eu> | www.bbmri-eric.eu<http://www.bbmri-eric.eu><https://mail.acpcloud.de/owa/redir.aspx?C=tQtD-G9C_kuPP8hViFQ4hgNjuhtf_dEI0JIE-vC5gXhf36JcThZMI5N8J9ocveR1mgFita1orqo.&URL=http%3a%2f%2fwww.bbmri-eric.eu%2f>

From: Boiten, Jan-Willem (Lygature) <janwillem.boiten at lygature.org>
Sent: Monday, January 20, 2020 12:57
To: Christian.Ohmann at med.uni-duesseldorf.de <Christian.Ohmann at med.uni-duesseldorf.de>; dario.longo at unito.it <dario.longo at unito.it>; Serena.BATTAGLIA at ecrin.org <Serena.BATTAGLIA at ecrin.org>; Petr Holub <petr.holub at bbmri-eric.eu>; maddalena at marionegri.it <maddalena at marionegri.it>; alex.sanchez at vhir.org <alex.sanchez at vhir.org>; isabelle.perseil at inserm.fr <isabelle.perseil at inserm.fr>; wittner at ics.muni.cz <wittner at ics.muni.cz>; Irene Schlünder <irene.schluender at bbmri-eric.eu>
Cc: eosc-life-wp4 at elixir-europe.org <eosc-life-wp4 at elixir-europe.org>; jacques.demotes at ecrin.org <jacques.demotes at ecrin.org>
Subject: RE: [Extern] - Preparation asked: EOSC-Life WP4 taskforce multimodal data

Dear Christian,

This is excellent; if you could introduce the use case in Paris and indicate the cloud aspects you foresee with the accompanying challenges, then that would be great as a starting point for the scoping discussion.

Best regards,


From: Christian.Ohmann at med.uni-duesseldorf.de <Christian.Ohmann at med.uni-duesseldorf.de>
Sent: 20 January 2020 12:21
To: Boiten, Jan-Willem (Lygature) <janwillem.boiten at lygature.org>; dario.longo at unito.it; Serena.BATTAGLIA at ecrin.org; petr.holub at bbmri-eric.eu; maddalena at marionegri.it; alex.sanchez at vhir.org; isabelle.perseil at inserm.fr; wittner at ics.muni.cz; irene.schluender at bbmri-eric.eu
Cc: eosc-life-wp4 at elixir-europe.org; jacques.demotes at ecrin.org
Subject: Re: [Extern] - Preparation asked: EOSC-Life WP4 taskforce multimodal data

Dear Jan-Willem,

ECRIN could propose a use-case based upon Jacques presentation at the ICTD 2019 in Paris, dealing with the best treament option for a subgroup of patients (personalised Medicine).

Kind regards



From: Boiten, Jan-Willem (Lygature) <janwillem.boiten at lygature.org<mailto:janwillem.boiten at lygature.org>>
Sent: 19 January 2020 18:21
To: Boiten, Jan-Willem (Lygature); dario.longo at unito.it<mailto:dario.longo at unito.it>; Serena BATTAGLIA; Petr Holub; Maddalena Fratelli; Alex Sanchez Pla; Ohmann, Prof. Dr. Christian - KKS; Isabelle Perseil; Rudolf Wittner; Irene Schlünder
Cc: eosc-life-wp4 at elixir-europe.org<mailto:eosc-life-wp4 at elixir-europe.org>
Subject: [Extern] - Preparation asked: EOSC-Life WP4 taskforce multimodal data

Dear all,

This Thursday we will have the opportunity to meet face2face as a kick-off for the EOSC-life WP4 working group around multimodal data (January 23rd 13:30-15:30). Please find below and attached the information that has been shared before regarding this session.

The primary goal of the Thursday meeting will be a scoping exercise. Where should we focus on in this task to become most effective and impactful?

As a preparation for this meeting I would like to ask you to think of one use case in this area that we could use as an exemplar to work out the guidance expected from us. The use case should be:

·        Multimodal, i.e. requiring multiple, distinctly different, biomedical data types

·        Using, or planning to use, significant cloud resources

·        Preferably be a sizeable project, either national or (preferably) spanning multiple countries

If you wish you can introduce the use case in 1-2 slides.

When we can discuss a few of these potential use cases in Paris, it should allow us to identify the common denominators where we should focus on in this task.

Looking forward to meet you all in Paris,


From: Eosc-life-wp4 <eosc-life-wp4-bounces at elixir-europe.org<mailto:eosc-life-wp4-bounces at elixir-europe.org>> On Behalf Of Boiten, Jan-Willem (Lygature)
Sent: 03 January 2020 16:00
To: dario.longo at unito.it<mailto:dario.longo at unito.it>; Serena BATTAGLIA <Serena.BATTAGLIA at ecrin.org<mailto:Serena.BATTAGLIA at ecrin.org>>; Petr Holub <petr.holub at bbmri-eric.eu<mailto:petr.holub at bbmri-eric.eu>>; Maddalena Fratelli <maddalena at marionegri.it<mailto:maddalena at marionegri.it>>; Alex Sanchez Pla <alex.sanchez at vhir.org<mailto:alex.sanchez at vhir.org>>; Christian.Ohmann at med.uni-duesseldorf.de<mailto:Christian.Ohmann at med.uni-duesseldorf.de>; Isabelle Perseil <isabelle.perseil at inserm.fr<mailto:isabelle.perseil at inserm.fr>>; Rudolf Wittner <wittner at ics.muni.cz<mailto:wittner at ics.muni.cz>>; Irene Schlünder <irene.schluender at bbmri-eric.eu<mailto:irene.schluender at bbmri-eric.eu>>
Cc: eosc-life-wp4 at elixir-europe.org<mailto:eosc-life-wp4 at elixir-europe.org>
Subject: [Eosc-life-wp4] EOSC-life WP4 taskforce multimodal data

Dear all,

First of all I would like to use this opportunity to wish you all the best for 2020!

The people in the To of this message have volunteered themselves to participate in the small taskforce that will try to scope out the EOSC-life task regarding guidance for sensitive multimodal data (Task 4.2). As a kick-off for this task force we have scheduled a f2f meeting in Paris (Venue location: Wellio, 15 Rue Traversière 75012 Paris, France) January 23rd 13:30-15:30.

This meeting is organized at the back of the pseudonymization workshop organized at the same venue.

The current line of action and some initial thoughts for this task has been summarized in the attachment.

I hope to see you all in Paris!

Best regards,


BTW: anybody in the CC: of this message wishing to join the taskforce is more than welcome to do so.

[cid:image001.png at 01D5CF91.30E3CA20]<http://www.lygature.org/>

Jaarbeursplein 6  |  3521 AL Utrecht  |  The Netherlands

Jan-Willem Boiten, PhD
Program Manager

janwillem.boiten at lygature.org<mailto:janwillem.boiten at lygature.org>
M +31 6 18 63 92 36

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